Building the container

docker-compose up --build

Expected Error:

Error: Invalid module name entered

This just means that the pepsirf command was not given arguments. You can ignore this since you will be providing arguments when running the image.

Running the PepSIRF image

docker run --mount type=bind,src=<path/to/local/directory>,target=/app/<new_directory> \
pepsirf [ --help | module_name <module_args*> ]

Note:

• Replace <path/to/local/directory> with the actual path to your local directory.
• Replace with the desired name for the directory in the container.
• If you are specifying a file (for reading or writing) from the source directory, use /app/<new_directory/file>
• Make sure that Docker is granted permission for file sharing with the local directory.