q2-ps-plot

Qiime2 Plug-in for the creation of visualizations from PepSIRF outputs.

Installation

Dependencies:

  • qiime2-2021.11 +

  • q2-pepsirf v2021.12

  • PepSIRF v1.4.0

  • altair v4.1.0

  • altair_saver v0.5.0

  • jsonschema 3.2

Qiime2 Installation:

Visit: https://docs.qiime2.org/2022.2/install/ for intallation documentation on Qiime2

PepSIRF Installation:

Visit: https://github.com/LadnerLab/PepSIRF for installation documentation on PepSIRF

q2-pepsirf Installation:

Visit: https://ladnerlab.github.io/pepsirf-q2-plugin-docs/Pepsirf_Plugins/q2-pepsirf1/ for installation documentation on q2-pepsirf

q2-ps-plot Installation:

Make sure your Qiime2 conda environment is activated by running the command:

conda activate qiime2-2021.11

You can replace qiime2-2021.11 above with whichever version of QIIME 2 you have currently installed.

Now you are ready to install ps-plot. Run the following commands:

conda install -c conda-forge altair altair_saver

pip install jsonschema==3.2

pip install git+https://github.com/LadnerLab/q2-ps-plot.git

Run qiime info to check for a successful installation. If installation was successful, you should see ps-plot: version in the list of installed plugins.

Typical Run Time: 2 Minutes 2.78 Seconds

Updating

To update ps-plot, run the following command:

pip install -U git+https://github.com/LadnerLab/q2-ps-plot.git