Import and Export Examples¶
This is a tutorial of how to do a qiime2 export and import.
Qiime Imports¶
Raw Data Example:
qiime tools import --input-path rawData.tsv --input-format PepsirfContingencyTSVFormat
--type 'FeatureTable[RawCounts]' --output-path rawData.qza
Bins Example:
qiime tools import --input-path bins.tsv --input-format PeptideBinFormat
--type 'PeptideBins' --output-path bins.qza
Enriched Directory Example:
qiime tools import --input-path enriched-dir/ --input-format EnrichedPeptideDirFmt
--type 'PairwiseEnrichment' --output-path enriched-dir.qza
Qiime Exports¶
Raw Data Example:
qiime tools export --input-path rawData.qza --output-path rawData.tsv --output-format PepsirfContingencyTSVFormat
Bins Example:
qiime tools export --input-path bins.qza --output-path bins.tsv --output-format PeptideBinFormat
Enriched Directory Example:
qiime tools export --input-path enriched-dir.qza --output-path enriched-dir/ --output-format EnrichedPeptideDirFmt