Import and Export File Format Tables¶
This is the place where you will find all file inputs and types for imports and exports.
Qiime Import Table¶
Type of Data |
–input-format arg |
–type arg |
|---|---|---|
Raw Data |
PepsirfContingencyTSVFormat |
‘FeatureTable[RawCounts]’ |
Normalized Col-sum |
PepsirfContingencyTSVFormat |
‘FeatureTable[Normed]’ |
Normalized Difference |
PepsirfContingencyTSVFormat |
‘FeatureTable[NormedDifference]’ |
Normalized Difference Ratio |
PepsirfContingencyTSVFormat |
‘FeatureTable[NormedDiffRatio]’ |
Normalized Ratio |
PepsirfContingencyTSVFormat |
‘FeatureTable[NormedRatio]’ |
Normalized Sized |
PepsirfContingencyTSVFormat |
‘FeatureTable[NormedSized]’ |
Zscores |
PepsirfContingencyTSVFormat |
‘FeatureTable[Zscore]’ |
Zscores Nan |
ZscoreNanFormat |
‘ZscoreNan’ |
Bins |
PeptideBinFormat |
‘PeptideBins’ |
Enrich Thresholds |
EnrichThreshFileFormat |
‘EnrichThresh’ |
Num. of Samples |
PepsirfInfoSNPNFormat |
‘InfoSNPN’ |
Num. of Peptides |
PepsirfInfoSNPNFormat |
‘InfoSNPN’ |
Sum of Probes |
PepsirfInfoSumOfProbesFmt |
‘InfoSumOfProbes’ |
Multi-File |
SubjoinMultiFileFmt |
‘MultiFile’ |
Protein Fasta |
ProteinFastaFmt |
‘ProteinFasta’ |
Peptide Fasta |
PeptideFastaFmt |
‘PeptideFasta’ |
Link Output |
PepsirfLinkTSVFormat |
‘Link’ |
Enriched Dir |
EnrichedPeptideDirFmt |
‘PairwiseEnrichment’ |
Enriched Peptide List |
PeptideIDListFmt |
‘PeptideIDList’ |
.DMP file |
PepsirfDMPFormat |
‘PepsirfDMP’ |
Deconv Singluar |
PepsirfDeconvSingularFormat |
‘DeconvSingular’ |
Deconv Batch Dir |
PepsirfDeconvBatchDirFmt |
‘DeconvBatch’ |
Score Per Round (Deconv) |
ScorePerRoundDirFmt |
‘ScorePerRound’ |
Peptide Assignment Map (Deconv) |
PeptideAssignMapDirFmt |
‘PeptideAssignmentMap’ |
fif file (Demux) |
PepsirfDemuxFifFmt |
‘DemuxFif’ |
Sample List (Demux) |
PepsirfDemuxSampleListFmt |
‘DemuxSampleList’ |
Index (Demux) |
PepsirfDemuxIndexFmt |
‘DemuxIndex’ |
Library (Demux) |
PepsirfDemuxLibraryFmt |
‘DemuxLibrary’ |
FASTQ file (Demux) |
PepsirfDemuxFastqFmt |
‘DemuxFastq’ |
Diagnostic file (Demux) |
PepsirfDemuxDiagnosticFormat |
‘DemuxDiagnostic’ |
Protein Alignment (proteinHeatmap) |
ProteinAlignmentDirFormat |
‘ProteinAlignment’ |
Mutant Reference file |
MutantReferenceFileFmt |
‘MutantReference’ |
Qiime Export Table¶
Type of Data |
–output-format arg |
|---|---|
Raw Data |
PepsirfContingencyTSVFormat |
Normalized Col-sum |
PepsirfContingencyTSVFormat |
Normalized Difference |
PepsirfContingencyTSVFormat |
Normalized Difference Ratio |
PepsirfContingencyTSVFormat |
Normalized Ratio |
PepsirfContingencyTSVFormat |
Normalized Sized |
PepsirfContingencyTSVFormat |
Zscores |
PepsirfContingencyTSVFormat |
Zscores Nan |
ZscoreNanFormat |
Bins |
PeptideBinFormat |
Enrich Thresholds |
EnrichThreshFileFormat |
Num. of Samples |
PepsirfInfoSNPNFormat |
Num. of Peptides |
PepsirfInfoSNPNFormat |
Sum of Probes |
PepsirfInfoSumOfProbesFmt |
Multi-File |
SubjoinMultiFileFmt |
Protein Fasta |
ProteinFastaFmt |
Peptide Fasta |
PeptideFastaFmt |
Link Output |
PepsirfLinkTSVFormat |
Enriched Dir |
EnrichedPeptideDirFmt |
Enriched Peptide List |
PeptideIDListFmt |
.DMP file |
PepsirfDMPFormat |
Deconv Singluar |
PepsirfDeconvSingularFormat |
Deconv Batch Dir |
PepsirfDeconvBatchDirFmt |
Score Per Round (Deconv) |
ScorePerRoundDirFmt |
Peptide Assignment Map (Deconv) |
PeptideAssignMapDirFmt |
fif file (Demux) |
PepsirfDemuxFifFmt |
Sample List (Demux) |
PepsirfDemuxSampleListFmt |
Index (Demux) |
PepsirfDemuxIndexFmt |
Library (Demux) |
PepsirfDemuxLibraryFmt |
FASTQ file (Demux) |
PepsirfDemuxFastqFmt |
Diagnostic file (Demux) |
PepsirfDemuxDiagnosticFormat |
Protein Alignment (proteinHeatmap) |
ProteinAlignmentDirFormat |
Mutant Reference file |
MutantReferenceFileFmt |