QIIME 2 Docs

ps-plot¶

Description Qiime2 Plug-in for the creation of visualizations from PepSIRF outputs.
Version 2024.4.29+57.g8bc9f3a
Website https://github.com/LadnerLab/q2-ps-plot
Support Please post to the QIIME 2 forum for help with this plugin: https://forum.qiime2.org
q2cli Invocation
qiime ps-plot
Artifact API Import
from qiime2.plugins import ps_plot

Pipelines¶

  • mutantScatters-tsv: Mutant Scatters
  • proteinHeatmap-dir: Protein Alignment Heatmap Dir
  • repScatters-tsv: Rep Scatter TSV
  • zenrich-tsv: zenrich TSV Pipeline

Visualizers¶

  • enrichmentRCBoxplot: Enriched Read Counts BoxPlot
  • mutantScatters: Mutant Scatters
  • proteinHeatmap: Protein Alignment Heatmap
  • readCountsBoxplot: Read Counts BoxPlot
  • repScatters: Rep Scatter
  • volcano: Volcano Visualizer
  • zenrich: Z Enrichment Variance Visualizer
  • zscatter: Z Score Scatter Visualization

Table of Contents

  • Tutorials
  • Available plugins
    • autopepsirf
    • pepsirf
    • ps-plot
  • Installation
  • QIIME 2 Import and Export
  • TSV/Dir Pipelines

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