readCountsBoxplot: Read Counts BoxPlotΒΆ

Docstring:

Usage: qiime ps-plot readCountsBoxplot [OPTIONS]

  Creates a boxplot for the read counts/ sum of probes

Inputs:
  --i-read-counts ARTIFACT
    InfoSumOfProbes     InfoSumOfProbes file, The first entry in each column
                        will be the name of the sample, and the second will be
                        the sum of the peptide/probe scores for the sample.
                                                                    [required]
Parameters:
  --p-png-out-dir TEXT  The name of the directory to wich to write the .png
                        output files to                        [default: './']
Outputs:
  --o-visualization VISUALIZATION
                                                                    [required]
Miscellaneous:
  --output-dir PATH     Output unspecified results to a directory
  --verbose / --quiet   Display verbose output to stdout and/or stderr during
                        execution of this action. Or silence output if
                        execution is successful (silence is golden).
  --example-data PATH   Write example data and exit.
  --citations           Show citations and exit.
  --help                Show this message and exit.

Import:

from qiime2.plugins.ps_plot.visualizers import readCountsBoxplot

Docstring:

Read Counts BoxPlot

Creates a boxplot for the read counts/ sum of probes

Parameters
----------
read_counts : InfoSumOfProbes
    InfoSumOfProbes file, The first entry in each column will be the name
    of the sample, and the second will be the sum of the peptide/probe
    scores for the sample.
png_out_dir : Str, optional
    The name of the directory to wich to write the .png output files to

Returns
-------
visualization : Visualization